A new publication - ASH1 mitotic chromatin binding

July 31st 2021

Congratulations to Philipp Steffen, Leonie Ringrose and their co authors.

Their paper The Trithorax group protein ASH1 requires a combination of BAH domain and AT hooks, but not the SET domain, for mitotic chromatin binding and survival was published in Chromosoma today!

The AT hooks and BAH domain stabilise ASH1 binding during interphase but are not essential. The same domains cooperate during mitosis and are essential for full mitotic binding.

The AT hooks and BAH domain stabilise ASH1 binding during interphase but are not essential. The same domains cooperate during mitosis and are essential for full mitotic binding.

“Bookmarking” proteins bind mitotic chromatin and mark genes for reactivation after mitosis. They are essential for epigenetic memory of active gene expression states. The Trithorax group protein ASH1 is a transcriptional activator that has all the hallmarks of a bookmarking protein, but how it binds to mitotic chromatin, whether this is important, and which genes are affected by this mitotic binding, was unknown. Using quantitative live imaging and Drosophila genetics, we show that ASH1 attaches to mitotic chromatin differently during interphase and mitosis, and that the domains that attach it to mitotic chromatin are essential for survival. By genome wide profiling we identify several target genes of ASH1 that specifically require these mitotic attachment domains for their correct activation. This work opens the door for gene - specific investigation of ASH1 as a bookmarking protein, and for a further investigation of the structural basis of mitotic chromatin binding.

Leonie presents in the Fragile Nucleosome seminar series

On 14th July, I was very honoured to be invited to give a seminar in the Fragile Nucleosome online seminar series. My talk was entitled “Take, remember, give back: What to epigenetic regulatory elements do, and are they all the same?” I enjoyed meeting the worldwide epigenetics community and had a great time in the “meet the speaker” session afterwards. Want to learn more about our 2020 paper? And what we are doing behind the scenes? Watch the video here

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A new publication: uniting theory and experiment to understand epigenetic memory and dynamic switching

September 20th, 2020.

Congratulations to Jeannette Reinig, Frank Ruge, Martin Howard and Leonie Ringrose

Their paper A theoretical model of Polycomb/Trithorax action unites stable epigenetic memory and dynamic regulation was published in Nature Communications today!

Modelling and experiments provide a coherent framework for the life stories of different PRE/TREs

Modelling and experiments provide a coherent framework for the life stories of different PRE/TREs

A large gap in our understanding of PRE/TRE behaviours has been the lack of a coherent theoretical framework that links developmental timing and transcriptional regulation to PRE/TRE activity. In this paper we developed a mathematical model comprising a PRE/TRE coupled to a promoter and including Drosophila developmental timing. With minimal parameter differences, the model can generate a rich repertoire of outputs and can recapitulate experimental data for both memory and dynamic regulation. Thus, the model provides a unifying theoretical framework for profoundly different experimentally observed modes of PcG/TrxG-mediated gene regulation. This work has broad implications for understanding the molecular nature of locus-specific and developmental differences in stability and flexibility of genome-wide PcG/TrxG regulation.

Welcome to our lab, Mihaela!

JULY 1ST 2020

Mihaela Pruteanu started her position as the new EU-ITN network manager.

It’s the EU-funded collaborative research and training network (Marie Sklodowska-Curie Innovative Training Network “PEP-NET: Predictive Epigenetics” under the coordination of Prof. Dr. Leonie Ringrose.

Welcome to our lab, Mihaela!

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Back in the lab!

May 25th 2020

After the restrictions of the containment for the spread of COVID-19 had been revised in the beginning of May, PhD students have since been allowed back on campus and thus in the labs. Although the terms regulating our return are strict and we are only allowed to work in small groups on two days a week in the lab creating a new challenging day-to-day that is still far from normal, we are very happy to be reunited with our pippettes and are doing experiments again!

Jeannette Reinig

Leonie started online live teaching

May 7

The course “Writing Scientific English: Online 2020” started with the first lecture on 5th May. 32 students took part and we experimented with live online whiteboard tools and group work. Call me old - fashioned, but I still find it amazing that I can get a bunch of people to wave their arms in the air when I am actually 600 km away. I am really fascinated by this new experiment!

Leonie Ringrose, 7th May 2020

Digital and analog communication tools

Digital and analog communication tools

A new working environment during times of COVID-19

april 16th 2020

None of us will ever forget what we are all living. This will go to the history books of our children, grandchildren, greatgrandchildren and all the generations coming. Who would have thought that the virus epidemic that started in the province of Hubei back in November 2019 would reach the entire world. Maybe some of us did but most of us might have not thought that this could become a pandemic, affecting every single person in a way or another.

 Every human being has the capacity to adapt to any circumstance and we have adapted as well and want to continue doing science! On Thursday, 9th April our PhD student Nancy Gutiérrez Hernández from the ITN PEP-NET Project prepared a Journal Club. The paper entitled “Mitotic Transcription and waves of gene reactivation during mitotic exit” was discussed together with Brigitte Bouman, Paniz Rasooli and Vanessa Treffner. Using skype and the screen sharing tool we could successfully discuss this scientific paper. We will continue having our virtual Journal Clubs every Thursday at 3 PM and in this way continue doing science even during times of COVID-19.

Karla Reano Arevalo

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First year practicals for bachelor students of biology are starting again!

January 20th 2020

The first year practical courses for bachelor students of biology started today and we are highly looking forward to four really interesting and fun weeks.

The aim of the first part is to extract the DNA of a banana and from humans in order to be able to look at it under the microscope. There are a few important steps necessary to get the DNA out of the nucleus.

The aim of the second part is to fixate, stain and look at different stages of mitosis in garlic roots. How beautiful this is!

Happy retirement, Petra!

December 20th 2019

Petra worked as a technician in our lab from May 2015 to December 2019, and was an important member of the group. Petra helped us to set up the new labs in Berlin, and kept everything running smoothly. Thank you Petra! We wish her all the best for her future and a wonderful time, traveling around the world.

Best wishes for a very happy retirement, Petra!

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